Publications citing EukRef

  1. Flegontova O, Flegontov P, Malviya S, Audic S, Wincker P, de Vargas C, et al. (2016). Extreme diversity of diplonemid eukaryotes in the ocean. Current Biology, 26: 3060-3065.
  2. Santoferrara LF, Bachy C, Alder VA, Gong J, Kim YO, Saccà A, et al. (2016). Updating Biodiversity Studies in Loricate Protists: the Case of the Tintinnids (Alveolata, Ciliophora, Spirotrichea). The Journal of Eukaryotic Microbiology, 63: 651–656.
  3. Gran‐Stadniczeñko S, Šupraha L, D Egge E, Edvardsen B. (2016). Haptophyte Diversity and Vertical Distribution Explored by 18S and 28S Ribosomal RNA Gene Metabarcoding and Scanning Electron Microscopy. The Journal of Eukaryotic Microbiology, 64, 514–532.
  4. Cooper MK, Phalen DN, Donahoe SL, Rose K, Šlapeta JR. (2016). The utility of diversity profiling using Illumina 18S rRNA gene amplicon deep sequencing to detect and discriminate Toxoplasma gondii among the cyst-forming coccidia. Veterinary Parasitology 2016, 216: 38–45.
  5. Berney C, Ciuprina A, Bender SJ, Brodie J, Edgcomb VP, Kim E, et al. (2017). UniEuk: Time to Speak a Common Language in Protistology! The Journal of Eukaryotic Microbiology, 64: 407–411.
  6. Fiore-Donno AM, Rixen C, Rippin M, Glaser K, Samolov E, Karsten U, et al. (2017). New barcoded primers for efficient retrieval of cercozoan sequences in high-throughput environmental diversity surveys, with emphasis on worldwide biological soil crusts. Molecular Ecology Resources, 12: 3218–3221.
  7. Jeuck AC, Nitsche F, Wylezich C, Wirth O, Bergfeld T, Brutscher F, et al. (2017). A Comparison of Methods to Analyze Aquatic Heterotrophic Flagellates of Different Taxonomic Groups. Protist, 168: 375–391.
  8. Santoferrara LF, Alder VA, McManus GB (2017). Phylogeny, classification and diversity of Choreotrichia and Oligotrichia (Ciliophora, Spirotrichea). Molecular Phylogenetics and Evolution, 112: 12-22.
  9. Flegontova O, Flegontov P, Malviya S, Poulain J, de Vargas C, Bowler C, et al. (2018). Neobodonids are dominant kinetoplastids in the global ocean. Environmental Microbiology.
  10. Karst SM, Dueholm MS, McIlroy SJ, Kirkegaard RH, Nielsen PH, Albertsen M. (2018). Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias. Nature Biotechnology, 36: 190–195.
  11. Modha S, Thanki A, Cotmore SF, Davison AJ, Hughes J. (2018). ViCTree: An automated framework for taxonomic classification from protein sequences. Bioinformatics.
  12. Santoferrara LF, Rubin E, McManus G. (2018). Global and local DNA (meta)barcoding reveal new biogeography patterns in tintinnid ciliates. Journal of Plankton Research, fby011-fby011.
  13. Tashyreva D, Prokopchuk G, Yabuki A, Kaur B, Faktorová D, Votýpka J, et al. (2018) Phylogeny and Morphology of New Diplonemids from Japan. Protists, 169:158–179.
  14. Linard B, Swenson K, Pardi F. (2018). Rapid alignment-free phylogenetic identification of metagenomic sequences. bioRxiv .
  15. Boscaro V, Syberg‐Olsen MJ, Irwin NAT, del Campo J,  Keeling PJ. (2018). What Can Environmental Sequences Tell Us About the Distribution of Low‐Rank Taxa? The Case of Euplotes (Ciliophora, Spirotrichea), Including a Description of Euplotes enigma sp. nov. The Journal of Eukaryotic Microbiology.
  16. Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, et al. (2018) Revisions to the Classification, Nomenclature, and Diversity of EukaryotesThe Journal of Eukaryotic Microbiology.